PUBLICATIONS

2019

Norris, E.T., Rishishwar, L., and Jordan, I.K., 2019. Rapid, adaptive human evolution facilitated by admixture in the Americas.  In: Human Migration: Biocultural Perspectives. Oxford University Press, USA. In Press.

Espitia-Navarro, H.F., Rishishwar, L., Mayer, L.W., and Jordan, I.K., 2019. Rapid bacterial typing in the post-genomic era. Microbial Forensics. In Press.

Norris, E.T., Rishishwar, L., Wang, L., Conley, A.B., Chande, A.T., Dabrowski, A.M., Valderrama-Aguirre, A.E., and Jordan, I.K., 2019. Assortative mating on ancestry-variant traits in admixed Latin American populations. Front Genet. 10:241. doi:10.3389/fgene.2019.00241.

Wozniak, J.E., Band, V.I., Conley, A.B., Rishishwar, L., Burd, E.M., Satola, S.W., Hardy, D, Tsay, R., Farley, M.M., Jacob, J., Dumyati, G., Jordan, I.K., and Weiss, D.S., 2019. A Nationwide Screen of carbapenem-resistant Klebsiella pneumoniae reveals an isolate with enhanced virulence and clinically undetected colistin-heteroresistance. Antimicrob Agents Chemother. doi: 10.1128/AAC.00107-19. [Epub ahead of print]

Nagar, S.D., Moreno, A.M., Norris, E.T., Rishishwar, L., Conley, A.B., O'Neal, K.L., Vélez-Gómez, S., Montes-Rodríguez, C., Jaraba-Álvarez, W.V., Torres, I., Medina-Rivas, M.A., Valderrama-Aguirre, A.E., Jordan, I.K., Gallo, J.E. 2019. Population pharmacogenomics for precision public health in Colombia. Front Genet. 10:241.

Bernardy, E.E., Petit, R., Moller, A., Blumenthal, J., McAdam, A., Priebe, G., Chande, A.T., Rishishwar, L., Jordan, I.K., Read, T., and Goldberg, J., 2019. Whole Genome Sequences of Staphylococcus aureus Isolates from Cystic Fibrosis Lung Infections. Microbiol Resour Announc. 8: e01564-18.

2018

Norris, E.T., Wang, L., Conley, A.B., Rishishwar, L., Mariño-Ramírez, L., Valderrama-Aguirre, A., and Jordan, I.K., 2018. Genetic ancestry, admixture and health determinants in Latin America. BMC Genomics. 19: 861.

 

Rishishwar, L., Wang, L., Wang, J., Yi, S.V., Lachance, J., and Jordan, I.K., 2018. Evidence for positive selection on recent human transposable element insertions. Gene. 675: 69-79.
 

Chande, A.T., Wang, L., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., and Jordan, I.K., 2018. GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwide. Nucleic Acids Research. 46: W121-W126.

Medina-Cordoba, L.K., Chande, A.T, Rishishwar, L., Mayer, L.W., Mariño-Ramírez, L., Valderrama-Aguirre, L., Valderrama-Aguirre, A., Kostka, J.E, and Jordan, I.K., 2018. Genome sequences of 15 Klebsiella spp. isolates from sugarcane fields in Colombia’s Cauca Valley. Genome Announcements. 6: e00104-18.
 

Wang, L. and Jordan, I.K., 2018. Transposable element activity, genome regulation and human health. Curr Opin Genet Dev. 49:25–33.
 

Gaby, J.C., Rishishwar, L., Valderrama-Aguirre, L., Green, S.J., Valderrama-Aguirre, A., Jordan, I.K., and Kostka , J.E., 2018. Diazotroph community characterization via a high-throughput nifH amplicon sequencing and analysis pipeline.  Applied and Environmental Microbiology. 84: e01512-17.

2017

Chande, A.T., Rowell, J., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., Medina-Rivas, M., and Jordan, I.K., 2017. Influence of genetic ancestry and socioeconomic status on type 2 diabetes in the diverse Colombian populations of Chocó and Antioquia. Scientific Reports. 7: 17127.
 

Rishishwar, L., Mariño-Ramírez, L., and Jordan, I.K., 2017. Benchmarking computational tools for polymorphic transposable element detection. Brief Bioinform. 18: 908–918.

Conley, A.B., Rishishwar, L., Norris, E.T., Valderrama-Aguirre, A., Mariño-Ramírez, L., Medina-Rivas, M., and Jordan, I.K., 2017. A comparative analysis of genetic ancestry and admixture in the Colombian populations of Chocó and Medellín. G3: Genes, Genomes, Genetics. 7: 3435-3447.
 

Wang, L., Norris, E.T., and Jordan, I.K., 2017. Human retrotransposon insertion polymorphisms are associated with health and disease via gene regulatory phenotypes. Frontiers in Microbiology. 8: 1418.
 

Sepúlveda-Torres, L.d.C., Rishishwar L., Rogers, M.L., Ríos-Olivares, E., Boukli, N., Jordan, I.K., and Cubano, L.A., 2017. A decade of viral mutations and associated drug resistance in a population of HIV-1+ Puerto Ricans: 2002–2011. PLoS ONE. E 12(5): e0177452.

Wang, L., Rishishwar, L., Mariño-Ramírez, L., and Jordan I.K., 2017. Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements. Nuc. Acids Res. 45: 2318–2328.
 

Rishishwar, L. and Jordan, I.K., 2017. Implications of human evolution and admixture for mitochondrial replacement therapy. BMC Genomics. 18: 140.
 

Rishishwar, L., Wang, L., Clayton, E.A., Mariño-Ramírez, L., McDonald, J.F., and Jordan I.K., 2017. Population and clinical genetics of human transposable elements in the (post) genomic era. Mob Genet Elements. 7: 1-20.
 

Gupta, A., Jordan, I.K., and Rishishwar, L., 2017. stringMLST: a fast k-mer based tool for multi locus sequence typing. Bioinformatics. 33: 119-121.
 

Topaz, N., Mojib, N., Chande, A.T., Kubanek, J., and Jordan, I.K., 2017. RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactions. Database. 2017: bax067.

2016

Clayton, E.A., Wang, L., Rishishwar, L., Wang, J., McDonald, J.F., and Jordan I.K., 2016. Patterns of transposable element expression and insertion in cancer. Front. Mol. Biosci. 3: 76.
 

Watve, S., Chande, A.T., Rishishwar, L., Bernardy, E.E., Mariño-Ramírez, L., Jordan, I.K., and Hammer, B.K., 2016. Whole genome sequence of 26 environmental Vibrio cholerae isolates. Genome Announcements. 4: e01396-16
 

Hu, F., Rishishwar, L., Sivadas, A., Mitchell, G.J., Jordan, I.K., Murphy, T.F., Gilsdorf, J.R., Mayer, L.W., and Wang, X., 2016. Comparative genomic analysis of Haemophilus haemolyticus and non-typeable Haemophilus influenzae and a new testing scheme for their discrimination. J. Clin. Micro. 54: 3010-3017.
 

Orata, F.D., Xu, Y., Gladney, L.M., Rishishwar, L., Case, R.J., Boucher, Y., Jordan, I.K., and Tarr, C.L., 2016. Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis. Int J Syst Evol Microbiol. 66: 4148-4155.
 

Rishishwar, L., Kraft, C.S., and Jordan, I.K., 2016. Population genomics of reduced vancomycin susceptibility in Staphylococcus aureus. mSphere. 1: e00094-16.
 

Jordan, I.K., 2016. The Columbian Exchange as a source of adaptive introgression in human populations. Biol Direct. 11: 17.
 

Hemme, C.L., Green, S.J., Rishishwar, L., Prakash, O., Pettenato, A., Chakraborty, R., Deutchbauer, A.M., Van Nostrand, J.D., Wu, L., He, L., Jordan, I.K., Hazen, T.C., Arkin, A.P., Kostka, J.E., and Zhou, J., 2016. Lateral gene transfer in a heavy metal-contaminated groundwater microbial community. mBio. 7: e02234-15.
 

Medina Rivas, M.A., Norris, E.T., Rishishwar, L., Conley, A.B., Medrano Trochez, C., Valderrama-Aguirre, A., Vannberg, F.O., Mariño-Ramírez, L., and Jordan, I.K., 2016. El Chocó Colombia: a hotspot of human biodiversity. Rev. Biodivers. Neotrop. 6: 45-54.

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